3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13800

Details:

PFam ID : PF13800

PFam Domain Description : Sigma factor regulator N-terminal

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 70

Average sequence length: 88.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13800	D5DFH3_BACMD_70_162	57.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13800	C3H797_BACTU_6_97	98.5

Sequence based PCA Plot of the family - PF13800 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay