3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04801

Details:

PFam ID : PF04801

PFam Domain Description : Sin-like protein conserved region

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 200

Average sequence length: 277.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04801	A5K3G8_PLAVS_328_510	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04801	Q4T5N3_TETNG_347_509	100

Sequence based PCA Plot of the family - PF04801 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=147 Length=8
Motif3 Start=410 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay