3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06160

Details:

PFam ID : PF06160

PFam Domain Description : Septation ring formation regulator, EzrA

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 137

Average sequence length: 514.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06160	Y397_MYCGE_252_560	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06160	EZRA_LACLA_7_568	100

Sequence based PCA Plot of the family - PF06160 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=109 Length=8
Motif3 Start=84 Length=8
Motif4 Start=148 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay