3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10516

Details:

PFam ID : PF10516

PFam Domain Description : SHNi-TPR

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 110

Average sequence length: 37.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10516	C1E946_MICSR_172_209	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10516	B3S103_TRIAD_98_135	99.0

Sequence based PCA Plot of the family - PF10516 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay