3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09111

Details:

PFam ID : PF09111

PFam Domain Description : SLIDE

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 125

Average sequence length: 112.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09111	A0C3B5_PARTE_824_936	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09111	D7G5A2_ECTSI_975_1098	100

Sequence based PCA Plot of the family - PF09111 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=97 Length=8
Motif3 Start=8 Length=8
Motif4 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay