3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09759

Details:

PFam ID : PF09759

PFam Domain Description : Spinocerebellar ataxia type 10 protein domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 116

Average sequence length: 92.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09759	Q7Z524_HUMAN_372_421	53.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09759	E1FHH8_LOALO_375_481	100

Sequence based PCA Plot of the family - PF09759 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay