3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12251

Details:

PFam ID : PF12251

PFam Domain Description : snRNA-activating protein of 50kDa MW C terminal

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 95

Average sequence length: 177.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12251	A0BSX2_PARTE_173_353	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12251	E4X405_OIKDI_229_448	100

Sequence based PCA Plot of the family - PF12251 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=18
Motif2 Start=133 Length=8
Motif3 Start=209 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay