3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05030

Details:

PFam ID : PF05030

PFam Domain Description : SSXT protein (N-terminal region)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 90

Average sequence length: 63.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05030	C4Q4H4_SCHMA_11_75	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05030	C4Q4H4_SCHMA_11_75	100

Sequence based PCA Plot of the family - PF05030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay