3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01118

Details:

PFam ID : PF01118

PFam Domain Description : Semialdehyde dehydrogenase, NAD binding domain

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 2923

Average sequence length: 122.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01118	A7C866_9GAMM_1_57	66.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01118	D5ZQ76_9ACTO_1_108	99.7

Sequence based PCA Plot of the family - PF01118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay