3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06003

Details:

PFam ID : PF06003

PFam Domain Description : Survival motor neuron protein (SMN)

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 213

Average sequence length: 134.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06003	C4QN34_SCHMA_96_296	93

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06003	Q98SU9_CHICK_12_264	100

Sequence based PCA Plot of the family - PF06003 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=85 Length=8
Motif3 Start=49 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay