3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00375

Details:

PFam ID : PF00375

PFam Domain Description : Sodium:dicarboxylate symporter family

Number of Sequence in 50% Dataset : 305

Number of Sequence in Full Dataset : 2137

Average sequence length: 372.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00375	A0Z066_LYNSP_185_320	85.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00375	D3ZNL4_RAT_1_145	100

Sequence based PCA Plot of the family - PF00375 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=25 Length=11
Motif3 Start=97 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay