3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00995

Details:

PFam ID : PF00995

PFam Domain Description : Sec1 family

Number of Sequence in 50% Dataset : 405

Number of Sequence in Full Dataset : 886

Average sequence length: 447.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00995	Q1JTF6_TOXGO_503_1032	72.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00995	Q4XD47_PLACH_14_176	99.7

Sequence based PCA Plot of the family - PF00995 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=512 Length=8
Motif2 Start=503 Length=8
Motif3 Start=112 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay