3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08209

Details:

PFam ID : PF08209

PFam Domain Description : Sgf11 (transcriptional regulation protein)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 78

Average sequence length: 32.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08209	A9RK45_PHYPA_289_319	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08209	A9RK45_PHYPA_289_319	97.4

Sequence based PCA Plot of the family - PF08209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay