3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00474

Details:

PFam ID : PF00474

PFam Domain Description : Sodium:solute symporter family

Number of Sequence in 50% Dataset : 666

Number of Sequence in Full Dataset : 3970

Average sequence length: 340.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00474	D0WYR8_VIBAL_2_59	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00474	D8JYA3_HYPDA_81_364	99.9

Sequence based PCA Plot of the family - PF00474 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=187 Length=8
Motif2 Start=102 Length=8
Motif3 Start=26 Length=8
Motif4 Start=177 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay