3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13144

Details:

PFam ID : PF13144

PFam Domain Description : SAF-like

Number of Sequence in 50% Dataset : 299

Number of Sequence in Full Dataset : 624

Average sequence length: 171.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13144	Q72YL7_BACC1_4_94	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13144	Q4JMN0_9BACT_46_272	100

Sequence based PCA Plot of the family - PF13144 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=47 Length=8
Motif3 Start=89 Length=8
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay