3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07647

Details:

PFam ID : PF07647

PFam Domain Description : SAM domain (Sterile alpha motif)

Number of Sequence in 50% Dataset : 252

Number of Sequence in Full Dataset : 759

Average sequence length: 63.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07647	TEA1_SCHPO_187_236	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07647	E9PRZ7_HUMAN_55_102	98.2

Sequence based PCA Plot of the family - PF07647 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8
Motif3 Start=28 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay