3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01043

Details:

PFam ID : PF01043

PFam Domain Description : SecA preprotein cross-linking domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 1266

Average sequence length: 120.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01043	D5H795_SALRM_395_570	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01043	B7U733_9MYCO_80_155	100

Sequence based PCA Plot of the family - PF01043 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=51 Length=17
Motif2 Start=106 Length=47

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay