3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14028

Details:

PFam ID : PF14028

PFam Domain Description : SpaB C-terminal domain

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 207

Average sequence length: 254.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14028	B5G9T6_9ACTO_68_187	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14028	F2WUB6_9ACTO_2_336	99.5

Sequence based PCA Plot of the family - PF14028 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=106 Length=8
Motif2 Start=89 Length=8
Motif3 Start=38 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay