3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05563

Details:

PFam ID : PF05563

PFam Domain Description : Salmonella plasmid virulence protein SpvD

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 108

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05563	B3H4D1_ARATH_1_133	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05563	Q5J4C6_SALCH_1_216	100

Sequence based PCA Plot of the family - PF05563 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay