3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04143

Details:

PFam ID : PF04143

PFam Domain Description : Sulphur transport

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 1673

Average sequence length: 43.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04143	B8P3P5_POSPM_112_224	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04143	Q2SRV2_MYCCT_106_148	90.4

Sequence based PCA Plot of the family - PF04143 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=8
Motif2 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay