3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02077

Details:

PFam ID : PF02077

PFam Domain Description : SURF4 family

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 137

Average sequence length: 214.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02077	B4L235_DROMO_120_225	34.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02077	E4XE38_OIKDI_3_293	100

Sequence based PCA Plot of the family - PF02077 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay