3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13501

Details:

PFam ID : PF13501

PFam Domain Description : Sulfur oxidation protein SoxY

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 246

Average sequence length: 108.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13501	A7BZ98_9GAMM_1_55	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13501	A6Q0Z3_NITSB_41_155	100

Sequence based PCA Plot of the family - PF13501 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=92 Length=8
Motif2 Start=81 Length=8
Motif3 Start=55 Length=8
Motif4 Start=24 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay