3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06031

Details:

PFam ID : PF06031

PFam Domain Description : SERTA motif

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 37

Average sequence length: 36.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06031	C2F9T2_LACPA_36_122	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06031	B4GMB0_DROPE_447_475	94.4

Sequence based PCA Plot of the family - PF06031 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay