3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06999

Details:

PFam ID : PF06999

PFam Domain Description : Sucrase/ferredoxin-like

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 326

Average sequence length: 216.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06999	E8R2X2_ISOPI_3_101	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06999	Q5K7K1_CRYNE_103_399	99.6

Sequence based PCA Plot of the family - PF06999 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=92 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay