3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09581

Details:

PFam ID : PF09581

PFam Domain Description : Stage III sporulation protein AF (Spore_III_AF)

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 164

Average sequence length: 169.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09581	B7AN26_9BACE_12_190	29.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09581	C6J3T3_9BACL_12_273	99.3

Sequence based PCA Plot of the family - PF09581 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay