3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06470

Details:

PFam ID : PF06470

PFam Domain Description : SMC proteins Flexible Hinge Domain

Number of Sequence in 50% Dataset : 347

Number of Sequence in Full Dataset : 1346

Average sequence length: 116.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06470	Q4XB49_PLACH_4_80	50.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06470	D9WBG0_9ACTO_1_162	100

Sequence based PCA Plot of the family - PF06470 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=8
Motif2 Start=31 Length=8
Motif3 Start=109 Length=14
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay