3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04026

Details:

PFam ID : PF04026

PFam Domain Description : SpoVG

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 216

Average sequence length: 84.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04026	A5Z9Z6_9FIRM_293_357	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04026	E6UGN9_RUMA7_120_221	100

Sequence based PCA Plot of the family - PF04026 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=18
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay