3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10578

Details:

PFam ID : PF10578

PFam Domain Description : Seminal vesicle protein repeat

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 36

Average sequence length: 11.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10578	D0LQM9_HALO1_374_477	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10578	Q6P6X2_RAT_300_311	57

Sequence based PCA Plot of the family - PF10578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay