3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13421

Details:

PFam ID : PF13421

PFam Domain Description : SPFH domain-Band 7 family

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 291

Average sequence length: 213.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13421	D6USQ7_9BACT_27_223	65.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13421	E1L2V5_9ACTN_40_280	100

Sequence based PCA Plot of the family - PF13421 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=172 Length=8
Motif2 Start=32 Length=8
Motif3 Start=61 Length=8
Motif4 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay