3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14444

Details:

PFam ID : PF14444

PFam Domain Description : S1-like

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 27

Average sequence length: 54.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14444	Q1NPG0_9DELT_293_345	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14444	C1M2R8_SCHMA_17_74	100

Sequence based PCA Plot of the family - PF14444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay