3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03925

Details:

PFam ID : PF03925

PFam Domain Description : SeqA protein

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 119

Average sequence length: 172.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03925	A2P6G2_VIBCH_1_70	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03925	A1STA5_PSYIN_1_207	100

Sequence based PCA Plot of the family - PF03925 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=133 Length=8
Motif2 Start=163 Length=14
Motif3 Start=22 Length=11
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay