3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07454

Details:

PFam ID : PF07454

PFam Domain Description : Stage II sporulation protein P (SpoIIP)

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 219

Average sequence length: 267.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07454	A7VVB1_9CLOT_40_383	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07454	A7VVB1_9CLOT_40_383	100

Sequence based PCA Plot of the family - PF07454 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=308 Length=20
Motif2 Start=229 Length=8
Motif3 Start=143 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay