3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13623

Details:

PFam ID : PF13623

PFam Domain Description : SurA N-terminal domain

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 100

Average sequence length: 138.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13623	D9XWN2_9ACTO_7_121	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13623	C9LKC8_9BACT_4_157	100

Sequence based PCA Plot of the family - PF13623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=9 Length=8
Motif3 Start=100 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay