3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10672

Details:

PFam ID : PF10672

PFam Domain Description : S-adenosylmethionine-dependent methyltransferase

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 1301

Average sequence length: 243.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10672	D7FS19_ECTSI_2_83	88.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10672	E4RC66_PSEPB_1_51	100

Sequence based PCA Plot of the family - PF10672 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=102 Length=8
Motif2 Start=52 Length=14
Motif3 Start=82 Length=17
Motif4 Start=153 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay