3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08666

Details:

PFam ID : PF08666

PFam Domain Description : SAF domain

Number of Sequence in 50% Dataset : 305

Number of Sequence in Full Dataset : 1709

Average sequence length: 64.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08666	D5AMX7_RHOCB_48_101	31.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08666	D2R8E6_PIRSD_55_118	78

Sequence based PCA Plot of the family - PF08666 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay