3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00735

Details:

PFam ID : PF00735

PFam Domain Description : Septin

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 596

Average sequence length: 200.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00735	E4WUH0_OIKDI_50_147	55.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00735	E4WUH0_OIKDI_153_226	100

Sequence based PCA Plot of the family - PF00735 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=29
Motif2 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay