3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04954

Details:

PFam ID : PF04954

PFam Domain Description : Siderophore-interacting protein

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 624

Average sequence length: 121.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04954	C0D008_9CLOT_1_272	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04954	E2MVW6_9CORY_144_328	100

Sequence based PCA Plot of the family - PF04954 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay