3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10141

Details:

PFam ID : PF10141

PFam Domain Description : Single-strand DNA-specific exonuclease, C terminal domain

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 151

Average sequence length: 183.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10141	E8US99_THEBF_651_811	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10141	E3E8W5_PAEPS_569_790	100

Sequence based PCA Plot of the family - PF10141 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=157 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay