3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10494

Details:

PFam ID : PF10494

PFam Domain Description : Serine-threonine protein kinase 19

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 88

Average sequence length: 234.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10494	A5A8X0_PIG_89_190	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10494	E1ZK84_9CHLO_61_322	100

Sequence based PCA Plot of the family - PF10494 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=4 Length=8
Motif3 Start=44 Length=8
Motif4 Start=170 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay