3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03911

Details:

PFam ID : PF03911

PFam Domain Description : Sec61beta family

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 155

Average sequence length: 39.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03911	D6GVB3_9EURY_20_59	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03911	SECG_METJA_11_49	100

Sequence based PCA Plot of the family - PF03911 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay