3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02895

Details:

PFam ID : PF02895

PFam Domain Description : Signal transducing histidine kinase, homodimeric domain

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 792

Average sequence length: 73.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02895	D5ELN1_CORAD_371_546	11.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02895	D5ELN1_CORAD_371_546	100

Sequence based PCA Plot of the family - PF02895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=41 Length=8
Motif2 Start=32 Length=8
Motif3 Start=11 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay