3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10502

Details:

PFam ID : PF10502

PFam Domain Description : Signal peptidase, peptidase S26

Number of Sequence in 50% Dataset : 179

Number of Sequence in Full Dataset : 1102

Average sequence length: 101.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10502	B6K679_SCHJY_61_161	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10502	A4GHU0_9BACT_135_308	100

Sequence based PCA Plot of the family - PF10502 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=166 Length=8
Motif2 Start=72 Length=11
Motif3 Start=15 Length=11
Motif4 Start=151 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay