3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04048

Details:

PFam ID : PF04048

PFam Domain Description : Sec8 exocyst complex component specific domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 114

Average sequence length: 123.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04048	B7XJX3_ENTBH_2_106	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04048	C4QZG5_PICPG_17_159	100

Sequence based PCA Plot of the family - PF04048 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay