3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00048

Details:

PFam ID : PF00048

PFam Domain Description : Small cytokines (intecrine/chemokine), interleukin-8 like

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 624

Average sequence length: 63.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00048	F1QTJ9_DANRE_3_40	69.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00048	F1QTJ9_DANRE_3_40	99.3

Sequence based PCA Plot of the family - PF00048 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay