3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09808

Details:

PFam ID : PF09808

PFam Domain Description : Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 86

Average sequence length: 169.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09808	Q4N706_THEPA_34_201	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09808	Q16XU7_AEDAE_8_204	100

Sequence based PCA Plot of the family - PF09808 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay