3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01342

Details:

PFam ID : PF01342

PFam Domain Description : SAND domain

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 122

Average sequence length: 76.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01342	D8TW06_VOLCA_652_756	62.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01342	A7MCC3_DANRE_136_208	100

Sequence based PCA Plot of the family - PF01342 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay