3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00477

Details:

PFam ID : PF00477

PFam Domain Description : Small hydrophilic plant seed protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 126

Average sequence length: 71.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00477	D6TNM3_9CHLR_8_83	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00477	D8UD47_VOLCA_642_735	94.4

Sequence based PCA Plot of the family - PF00477 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=17
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay