3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09377 Details: PFam ID : PF09377 PFam Domain Description : SBDS protein C-terminal domain Number of Sequence in 50% Dataset : 56 Number of Sequence in Full Dataset : 260 Average sequence length: 133.8 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF09377B5X8W4_SALSA_132_20527.2 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF09377C5LQQ3_9ALVE_109_184100 Sequence based PCA Plot of the family - PF09377 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=35 Length=8Motif2 Start=26 Length=8Motif3 Start=1 Length=8Motif4 Start=14 Length=11 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF09377
PFam Domain Description : SBDS protein C-terminal domain
Number of Sequence in 50% Dataset : 56
Number of Sequence in Full Dataset : 260
Average sequence length: 133.8
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER