3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02117

Details:

PFam ID : PF02117

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Sra

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 90

Average sequence length: 288.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02117	SRA25_CAEEL_5_334	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02117	E3MV44_CAERE_1_347	98.8

Sequence based PCA Plot of the family - PF02117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=274 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay