3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13562

Details:

PFam ID : PF13562

PFam Domain Description : Sugar nucleotidyl transferase

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 77

Average sequence length: 160

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13562	B1L6K9_KORCO_2_148	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13562	A1ZD48_9BACT_2_162	100

Sequence based PCA Plot of the family - PF13562 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=11
Motif2 Start=1 Length=8
Motif3 Start=137 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay